Comparison of the two competing topologies (scleractinian monophyly, SM, and “naked coral”, NC) using the Approximately Unbiased (AU), Kishino-Hasegawa (KH) and Shimodaira-Hasegawa (SH) tests for a variety of tree reconstruction methods.

<p>The p-values denote the probability that the best ML topology is equivalent to the alternative topologies. Unless otherwise indicated, the trees were based on the alignment of protein coding genes.